stuff I've seen:
The Boxtrolls
Coraline
Corpse Bride
Fantastic Mr. Fox
Frankenweenie
James and the Giant Peach (partly live-action)
Kubo and the Two Strings
Missing Link
The Nightmare Before Christmas
ParaNorman
The Pirates! In an Adventure with Scientists!
Wallace & Gromit: The Curse of the Were-Rabbit